RnoEX0028471 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2460331-2470198:+
Coord C1 exon
chr16:2460331-2460469
Coord A exon
chr16:2461095-2461261
Coord C2 exon
chr16:2469943-2470198
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTTTACATTTTTAGAAC
3' ss Score
10.63
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCCGCTGCTCTTTGTGGGTCCCACTGGCACAGGAAAGTCAGTGTACGTGAAGGATAAGCTAATGAATCACTTGGAAAAGGGAAAGTACTTTCCTTTCTATGTTAATTTCTCCGCACGGACCAGTGCCAATCAGGTTCAG
Seq A exon
AACATTATTATGGCTAGATTGGACAAAAGGCGCAAGGGAGTATTTGGACCACCTATGGGAAAGAAGTGTGTAGTGTTCATAGATGATATGAATATGCCTTCACTGGAGAAATATGGAGCCCAACCTCCTATTGAGTTATTACGCCAGTTTTTTGACTGTGGACATTG
Seq C2 exon
GTATGACCTTAAGGACACCACCAAAATCACACTGGTTGATATAGAGCTCATAGCTGCCATGGGGCCTCCAGGCGGCGGAAGGAATGCCGTCACCCCGCGTTTCATCCGACATTTCAACATCTGCACCATCAATTCCTTCAGCGACGAAACTATGGTCCGAATTTTCTCATCAATCATGATGTTCTACCTTAGGACTCATGATTTTTCTCCAGAGTACTTTGTACTCGGACACCAAATAGTTAGTGCGACTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(16.9=100)
A:
PF127752=AAA_7=FE(20.2=100)
C2:
PF127752=AAA_7=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGGAAAGTCAGTGTACGT
R:
CGCTGAAGGAATTGATGGTGC
Band lengths:
256-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]