BtaEX6094442 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44285377-44289527:+
Coord C1 exon
chr22:44285377-44285496
Coord A exon
chr22:44287015-44287203
Coord C2 exon
chr22:44289376-44289527
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTAAACCAACAGGCT
3' ss Score
8.2
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAACTGATTCCAACAAGCGATAGCAATGTGGTTGTCTCTCTCACACGCCTCTTTGAAGTACTGCTCTGCAACGCGGTGGAGAACGATCCTACCAGCAAGCATATTCGTGTTTGGATTATG
Seq A exon
GCTTGCTTTATATTTTCTTTAATTTGGTCCATTGGAGGAAGCTGTGATACAGATGGTCGCATTGTTTTTGATGTTTACATACGAATAGTCTTAATGGGAAAAGATGAAAACAACCCAATACCTGATTCTGTGGGTAAATGGGAATGCAACTTTGATGAAAAAGGCCTAGTCTATGACTACATGTATGAG
Seq C2 exon
TTGAAAAACCGAGGTCGCTGGATCCACTGGAATGAACTAATTAAAAGTACTAGTTTAGGAAATAGACGTGTCAAGATTCAAGATATCATAGTCCCTACCATGGATACAATTAGATATACATTTCTAATGGATTTGAGTATTACCTATGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'32-33,'32-32,35-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(11.1=58.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTGTCTCTCTCACACGC
R:
TTGCATAGGTAATACTCAAATCCATT
Band lengths:
244-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]