DreEX6079828 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19608269-19609035:-
Coord C1 exon
chr23:19608916-19609035
Coord A exon
chr23:19608500-19608688
Coord C2 exon
chr23:19608269-19608420
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTGTCCTATTGCAGGCA
3' ss Score
11.69
5' ss Seq
GAGGTTGGC
5' ss Score
3.55
Exon sequences
Seq C1 exon
GAGGTAATTCCCAGCAGCAATAGCAATACTGTTGTGTCTCTCACACGACTTTTTGAGATGCTGCTGACTAGACCTGTGAATGAAGACCCAGGAAACAAAAACATGCGCACATGGATCATG
Seq A exon
GCAGCTTTTGCCTTTGCCCTGGTTTGGTCTGTTGGCGGTTGCTGTGATACAGACAGTCGCAGTCGATTTGACAAGTTTTTGAGGGAAATGATCTCAGGGAAGGCAGAAAACTGCCCCATTCCTGCTGCTGTGTCAAAATGGGAATGTCCCTTTGATGAGAAAGGTCTTGTGTATGACTACAGTTATGAG
Seq C2 exon
TTCAAAGGAAAAGGACGTTGGGTGCACTGGAATGAGTCGATCAGTAATGCACCATTAGGAGACAAGAATACTAAAGTACAGGATATCATTGTCCCCACCATTGACACTGTGCGATACACTTATCTAATGGACCTCTGCATTCAATATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'37-38,'37-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(11.4=60.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAATAGCAATACTGTTGTGT
R:
CCCATATTGAATGCAGAGGTCCA
Band lengths:
257-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]