RnoEX6054495 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2452999-2459328:+
Coord C1 exon
chr16:2452999-2453118
Coord A exon
chr16:2456560-2456748
Coord C2 exon
chr16:2459177-2459328
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATAATCTTTTCCACCAACAGGCC
3' ss Score
9.74
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAATTGATCCCTACAGGTAACATCAATGCGGTTGTGGCACTCACGCGCCTCATTGAAATCCTGCTCTGTACTGTGGTGGAAAATGATCCCAGTAGCAAGCACATCCGTGTCTGGATTATG
Seq A exon
GCCACCTTTGTATTCTCTTTGATTTGGTCAGTTGGAGCAAGTTGTGATACAGATGGTCGTCTTGCTTTTGATAATTTCCTACGGTCACTTGTAACAGGAAAAAATGACAAAGCCCCAATGCCAGTCTTCATCAATAAATGGGAATGCCCATTTGATGAAAAGGGCCTGGTCTACGACTACATGTATGAG
Seq C2 exon
TTAAGAAACCGAGGTCGCTGGATCCATTGGAATGACTTAATTAAAAGTTCTGATATAGAAGACAGACGTACCAAGATTCAAGATATTATAGTCCCTACAATGGACACGATTAGATATACTTTCCTAATGGATTTGTGCATTTCCCATGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'39-45,'39-44,40-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(11.4=60.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCAATGCGGTTGTGGCA
R:
CATGGGAAATGCACAAATCCA
Band lengths:
250-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]