MmuEX6040103 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27605325-27612125:+
Coord C1 exon
chr14:27605325-27605444
Coord A exon
chr14:27609357-27609545
Coord C2 exon
chr14:27611974-27612125
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATAATTTTTTTCACCAACAGGCC
3' ss Score
9.62
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAACTGATTCCTACAAGTAACATCAATGCGGTTGTGGCACTCACGCGCCTCATTGAAATACTGCTCTGTACTGTTGTGGAAAATGAACCCAATAGCAAGCACATTCGTGTCTGGACTATG
Seq A exon
GCCTCCTTTATATTCTCTTTGATTTGGTCAATTGGAGCAAGTTGTGATACAGATGGTCGTCTTGCTTTTGATGCTTTTCTACGAACAGCTGTATCAGGAAGAAATGAAGAAGCCCCAATGCCAGTTTCTATCAGTAAATGGGAATGCCCATTTGATGAAAAGGGCCTAGTCTATGACTACATGTATGAG
Seq C2 exon
TTAAGAAACAGAGGTCGCTGGATCCATTGGAATGAATTAATTAAAAGTTCTGATTTAGAAGACAAGCGTGCCAAGATTCAAGATATTATAGTCCCTACAATGGACACGATTAGATATACTTTCCTAATGGATTTGAGCATTACCTCTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(11.7=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCAATGCGGTTGTGGCA
R:
TGCAGAGGTAATGCTCAAATCCA
Band lengths:
252-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: