BtaEX6094563 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46542794-46562231:-
Coord C1 exon
chr22:46562169-46562231
Coord A exon
chr22:46558891-46558961
Coord C2 exon
chr22:46542794-46542869
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCGTCTTTTCTTCCCCACAGACT
3' ss Score
12.11
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACTGTAAATTGTTACCTCATAGACAATAATGGATTTATTCTGGTATCTGAAGACTACACTCAG
Seq A exon
ACTGGAGACTTTTTTGGTGAGGTGGAGGGAGCTGTGATGAACAAATTGTTAACAATGGGCTCCTTTAAAAG
Seq C2 exon
AATTACCCTTTATGACTATCAAGCCATGTGCAGGGCCAACAAGGAGAGCAGTGACGGCGCCCACGGTCTTCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'29-27,'29-26,31-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGGTATCTGAAGACTACACTCA
R:
ATCCAGAAGACCGTGGGCG
Band lengths:
103-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]