GgaEX6010223 @ galGal4
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7680767-7693634:+
Coord C1 exon
chr12:7680767-7680829
Coord A exon
chr12:7684376-7684446
Coord C2 exon
chr12:7693559-7693634
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTGTATTTTTCCCTTGTAGACT
3' ss Score
10.45
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCAATCAACTGTTACCTAATAGACAACAATGGATTTATCCTAGTGTCTGAAGACTATGGGCAG
Seq A exon
ACTGGTAACTTTTTTGGGGAGGTTGAAGGGGCTGTGATGAACAAATTGCTAACAATGGGCTCCTTTAAGAG
Seq C2 exon
AATTACACTTTATGACTACCAGGCCATGTGTAGAACAAACAAAGAGAGTAGCGACAGTGCCCATAGCTTACTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'37-45,'37-42,39-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000008674fB5700
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATCAACTGTTACCTAATAGACA
R:
CAGTAAGCTATGGGCACTGTCG
Band lengths:
136-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]