BtaEX6094832 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014782 | STAB1
Description
Bos taurus stabilin 1 (STAB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205570]
Coordinates
chr22:48886878-48887687:-
Coord C1 exon
chr22:48887486-48887687
Coord A exon
chr22:48887067-48887216
Coord C2 exon
chr22:48886878-48886982
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCCTCATCCCCTCCCTGAGCTT
3' ss Score
-3.36
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGCAGCCCTGAGGCCTGCTGGCGCTACTTCTCCAAGTTCTGGACGTCCCCTCCGCTGCACTCCTTGGCCCTGCGCAGTGTGTGGACCCGGCCCAGCCACTGGGGTCACCCCCAAGGCCTGGGCAGGGGCTGCTACCGCAACTGTGTCACCACCACCTGGAAGCCCAGCTGCTGCCCTGGTCACTACGGCAGCGAGTGCCGAG
Seq A exon
CTTGCCCTGGCGGCGCCAGCAGCCCCTGTAACCAGCGCGGCTCGTGCATGGACGGCATGAGCGGCAGCGGGGAGTGCAGGTGCCACACGCGCTTCGCCGGCACGGCCTGTGAGCTCTGTGCCCCGGGAGCCTTTGGGCCCCTGTGCCAAG
Seq C2 exon
CCTGCAACTGTACCTCCCACGGCCGCTGTGACGAGGGCCTGGGGGGCTCCGGCTCCTGCTTCTGTGATGAGGGCTGGACGGGGCCACGCTGTGAGGTGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014782-'62-75,'62-73,63-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGCTACTTCTCCAAGTT
R:
CTCATCACAGAAGCAGGAGCC
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]