RnoEX6054728 @ rn6
Exon Skipping
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7223426-7224478:-
Coord C1 exon
chr16:7224280-7224478
Coord A exon
chr16:7223609-7223758
Coord C2 exon
chr16:7223426-7223530
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACATCTACACTATGCCCTAGCTT
3' ss Score
3.24
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGCAGCCCTGAGGCCTGCTGGCGTCACTACTCCAAGTTCTGGGCAACTCCTCTGCACTCCATAACCATGCGTGGAGGTTCCTGGATAACGCCTAGTTTTTGGAACCGCAACCACATGGGTAGGGGTTGCCACCGCAAATGTGTCACCACCGTCTGGAAGCCTAGCTGTTGCCCTGGTCACTATGGCGCTGACTGCCATG
Seq A exon
CTTGCCCCGGTGGTCCCAGAAGCCCCTGCAGTGGCCACGGTGTGTGCCTGGATGGCATAAGCGGAAGTGGGCAGTGCAATTGTCATCCGGGTTTTGCCGGGACAGCGTGTGAACTCTGTGCCCCGGGTGCCTTCGGACCCCAGTGCCAAG
Seq C2 exon
CATGCCGCTGTGCCCCACATGGGCGTTGCGATGAAGGTCTCGGGGGCTCTGGCTCCTGCTTCTGCGATGAGGGCTGGACTGGGCCACGCTGTGATGTGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434-'61-73,'61-72,63-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=WD(100=86.3)
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0)
Main Skipping Isoform:
ENSRNOT00000025394fB14425
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGTTCTGGGCAACTCC
R:
CCTCATCGCAGAAGCAGGAG
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]