HsaEX0062117 @ hg19
Exon Skipping
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:18628]
Coordinates
chr3:52554820-52555716:+
Coord C1 exon
chr3:52554820-52555021
Coord A exon
chr3:52555377-52555526
Coord C2 exon
chr3:52555612-52555716
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTACCCCATCCCCAGCTT
3' ss Score
6.59
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGCAGCCCTGAGGCCTGCTGGCGCTTCTACCCGAAGTTCTGGACGTCCCCTCCGCTGCACTCTTTGGGATTACGCAGCGTCTGGGTCCACCCCAGCCTTTGGGGTAGGCCCCAAGGCCTGGGCAGGGGCTGCCACCGCAATTGTGTCACCACCACCTGGAAGCCCAGCTGCTGCCCTGGTCACTATGGCAGTGAGTGCCAAG
Seq A exon
CTTGCCCTGGCGGCCCCAGCAGCCCTTGTAGTGACCGTGGCGTGTGCATGGACGGCATGAGTGGCAGTGGGCAGTGTCTGTGCCGTTCAGGTTTTGCTGGGACAGCCTGTGAACTCTGTGCTCCTGGTGCCTTTGGGCCCCATTGTCAAG
Seq C2 exon
CCTGCCGCTGCACTGTGCATGGCCGCTGTGATGAGGGCCTTGGGGGCTCTGGCTCCTGCTTCTGTGATGAAGGCTGGACTGGGCCACGCTGTGAGGTGCAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327_CASSETTE9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCCGAAGTTCTGGACGT
R:
CATCACAGAAGCAGGAGCCAG
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)