GgaEX0001758 @ galGal3
Exon Skipping
Gene
ENSGALG00000001535 | STAB1
Description
NA
Coordinates
chr12:633970-635363:+
Coord C1 exon
chr12:633970-634195
Coord A exon
chr12:634629-634778
Coord C2 exon
chr12:635259-635363
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTGGATGTCCTTGTCTGCAGCCT
3' ss Score
6.43
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GGGGGAACCTGGGGCTGCCACTATTTCGAAAACCAACTGTTCAGGAACACTTTTCTGTTTCGCCATAACCACCCATTGCGGCCATCCTGGTCTTCCTCCCCGTGGGAACCTTTCAGAAGACACTTCTCTTCCAGGGGGCCTCTGAAACGAGGCTGCAGGAGGAACTGCATTTCCACCCAGTGGGTCCCCCAGTGCTGCAAGAACCACTATGGCCGCGACTGCCAGG
Seq A exon
CCTGCCCGGGGGGGCTTGAGGCGCCGTGTGGGAACCGTGGGACCTGCGATGACAGTATCAGTGGCTCGGGGCGGTGCAACTGCAGCCAGGCCTTCATCGGGACCAGCTGTGAGCTGTGCGCACCGGGCAGATATGGGCCCCAGTGCCGAG
Seq C2 exon
AGTGTAATTGCACTGAGCATGGCGTGTGCAATGGAGGGCTGCACGGCGATGGCTTTTGCTTCTGTGCCGAGGGCTGGACTGGAGAGCGCTGCGAAGTCCGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535-'57-61,'57-60,58-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTCGCCATAACCACCCA
R:
CCCTCGGCACAGAAGCAAAAG
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]