DreEX6097717 @ danRer10
Exon Skipping
Gene
ENSDARG00000076484 | stab1
Description
stabilin 1 [Source:ZFIN;Acc:ZDB-GENE-050208-554]
Coordinates
chr22:10271603-10275951:-
Coord C1 exon
chr22:10275771-10275951
Coord A exon
chr22:10275541-10275690
Coord C2 exon
chr22:10271603-10271707
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGTGTTGTGTTTTAGTGT
3' ss Score
10.21
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AACAGAACTAGCATATGCCGACAACCTTACAGACCATACCGAATGCCCAATTACTATGGTATGTACTCGTACGGTTACGGATACAGGTCCTACAGAGATTTTTTGGGTTGTGACCGGGTATGCACAAAATTGACGTGGGACACAAAGTGCTGTAAAAACCACTTCGGAAGAGACTGCCAGG
Seq A exon
TGTGTTCTGGTGGTCTGGAGGCGCCGTGTGGAGAGCATGGAGACTGTGATGATGGACAGGGCGGCACAGGCGTGTGTAAATGTCATACAGGATTTACAGGCAAAGGCTGTGAGCTCTGTCTCGCCAATCACTTTGGGCCAAACTGCACAG
Seq C2 exon
CGTGTAATTGTACGATCCACGGCAAGTGTGATGAAGGCCTGGACGGTGACGGCAGCTGTTTTTGTCAGGAGGGATGGATGGGTGAAAGCTGCCAGACAGCAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076484-'54-58,'54-57,55-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACCATACCGAATGCCCA
R:
CAGCTTTCACCCATCCATCCC
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]