BtaEX6094892 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49091689-49110929:-
Coord C1 exon
chr22:49110768-49110929
Coord A exon
chr22:49109943-49110195
Coord C2 exon
chr22:49091689-49091846
Length
253 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCCACCCATCCCCAGGAA
3' ss Score
9.27
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AGGACCCCAAGAGTCAGAAGCTGAAGTACGAGTGGTGCAGTGTCGGTGTCCTGGACTACGACAAGGAGAACAAGCTGTACCTAGTGCACAAGACGAGTGAGGATGGCTTAGTGCGAGATGAGACGGGGAAGCCTATCCTGAATGGCGGGGTCACGCCTGAAG
Seq A exon
GAAGGTCACCCCTCCTGATCTGTCAGTACTGGGTGCCAAGGATCCAGCTCCTCTTCTGTGCTGAGGACCCACGTGTGTTCACACGACGTGTGGTCGAGGCCAACGCCCTGCGCAAGAACACAGAGGCGCTGCTGCTGTACAACCTGTACGTGGACTGCATGCCCTCTGAGGGCCAGCGGCTCGTCAGCGAGCAGAGCCTGAACAAGATCAAGCAGTGGGCCATGAGCACGCCTCGGATGCGCAAAGGGCCCGC
Seq C2 exon
GGTTCTGGAGCACCTCAGCAACCTCTCTAGGGAAGTAAACCTGGACTACGAGCGCAGCATGAACAAGATCAACTTTGACAAAATTGTCTCCTCCAAGCCAGAGACGTTCTCCTACGTGACTCTGCCTAAGAAGGAGGAGGAGAAGGTGCCCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAAGAGTCAGAAGCTGA
R:
GCACCTTCTCCTCCTCCTTCT
Band lengths:
308-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]