GgaEX6009968 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2869305-2871634:+
Coord C1 exon
chr12:2869305-2869466
Coord A exon
chr12:2869987-2870236
Coord C2 exon
chr12:2871477-2871634
Length
250 bp
Sequences
Splice sites
3' ss Seq
ACTTTATTTTCATTTTTCAGGAA
3' ss Score
11.72
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGGACCCTAAAAGCCAGAAGTTAACCTACAAGTGGACTGATGTTGGTGTTCTGGATTATGACAAGGAGACGAAGCTCTATTTGGTCCATAAGTTAGATCAGAATGGGCTGGTCCGTGATGAAGAAGGGAGACCCATCCTCAATGGAGGAATAACTCCAGAAG
Seq A exon
GAAGAGCTCCATTGCTGCCATGTCAGTACTGGGTGCCACGCATTTACCTGCTGTTTCTGGCTGAAGATCCTCGGGTGTTTGCACAGAGAATAGTTTCTGCCAACATCCTACGTAAAAAGACACAGATGCTGCTACTCTATCACCTGTATGTGGACTGCATGCCCACAGATGGACTAAATAGCATTAGTGAGACAAGCCTGGAGAAAATGAAGCTGTGGGCTCTGCATACACCCAAGATGAAGAAGAACAG
Seq C2 exon
AGTACTAGGCTGCATGGGCTGTCTGGAGAAAGAAGTGAAATTGGACTATGAGCGCGCTATGAACAGGATGATCTTTGACAGAGCAGTCACTTCCAAACCTCAGATATTTTCTTATGTCACCCTGCCAGACAAGGAGGAGAGGAAAGTACCAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'5-12,'5-5,6-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCGTGATGAAGAAGGGA
R:
AAGACACCGTGGCAAGCATC
Band lengths:
308-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]