RnoEX0028393 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7392162-7395283:-
Coord C1 exon
chr16:7395122-7395283
Coord A exon
chr16:7394330-7394582
Coord C2 exon
chr16:7392162-7392319
Length
253 bp
Sequences
Splice sites
3' ss Seq
CACCCCTACCTGATTCCCAGGAA
3' ss Score
6.44
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
AGGACCCCAAGAGTCAGGAACTGGACTACAGATGGTGTGAAGTTGGTGTCCTTGACTATGACGAAGAAAAGAAACTGTACTTGGTGCAGAAGACTGACAAGAGAGGCTTGGTGCGAGATGAGATGGGGATGCCCATCGTGAATGGAGGGGTCACCCCTGAAG
Seq A exon
GAAGGCCACCACTCTTGGACACCCAGTACTGGGTCCCGAGGATCCAGCTCCTCTTCTGTGCTGAGGACCCACGAGTGTTCACACAGCGTGTGGTCCAGGCCAACGCTCTGCGCAAGAACACAGAGGCGCTGTTGCTCTACAACCTGTACGTGGATTGCATGCCCACGGAAGGCCAGCGGGTCATCAACGAGCAGAGCTTGAGCAAGATAAAACAGTGGGCTTTGAGCACACCACGCATGCGCAAGGGGCCGAG
Seq C2 exon
CGTCCTGGAGCACCTTAGCAGCCTGGCCAGAGAAGTGAACCTGGACTATGAACGCAGCATGAACAAGATCAACTTTGACCAGATTGTCTCTTCTAAGCCAGAGACATTCTCCTTTGTGACTCTTCCTGAAAAAGAGGAAGAAAAGGTGCCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=0.006 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCCAAGAGTCAGGAAC
R:
TTCAGGAAGAGTCACAAAGGAGA
Band lengths:
292-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]