MmuEX6040509 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32121986-32124974:-
Coord C1 exon
chr14:32124813-32124974
Coord A exon
chr14:32124022-32124274
Coord C2 exon
chr14:32121986-32122143
Length
253 bp
Sequences
Splice sites
3' ss Seq
ACCCCCACCCCAACCCCCAGGAA
3' ss Score
7.3
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
AGGACCCCAAGAATCAGGAACTGGACTATAGATGGTGTGAAGTTGGCGTCCTTGACTACGATGAAGAAAAAAAACTGTATTTGGTGCAGAAAACTGACAAGAGAGGCTTGGTGCGCGATGAGATGGGGATGCCCATCCTGAATGGAGGGATCACCCCTGCGG
Seq A exon
GAAGGCCACCACTCCTGGCCACCCAGTACTGGGTCCCGAGGATCCAGCTCCTCTTCTGTGCTGAGGATCCACGTGTGTTCACACAGCGCGTGGTCCAGGCCAACGCTCTGCGCAAGTACACAGAGGCGCTGTTGATGTACAACCTGTATGTGGATTGCATGCCCACCGAGGGCCGGCGGGTCATCAATGAGCAGAGCTTGAGCAAGATAAAGCAGTGGGCTTTGAGCACACCGCGCATGCGCAAGGGGCAGAG
Seq C2 exon
CGTCCTGGAGCATCTTAGCTGCCTGGCCAGAGAAGTGAACCTGGACTACGAACGTAGCATGAACAAGATCAACTTTGACCAAATTGTCTCTTCTAACCCAGAGACATTCTCCTATGTGACTCTTCCTGAAAAAGAGGAAGAGAAGGTACCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.000 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCCAAGAATCAGGAACT
R:
TCCTCTTTTTCAGGAAGAGTCACA
Band lengths:
300-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: