MmuEX6040508 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32124022-32128380:-
Coord C1 exon
chr14:32128248-32128380
Coord A exon
chr14:32124813-32124974
Coord C2 exon
chr14:32124022-32124274
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCGTCTCTGTTTTAGAGG
3' ss Score
9.99
5' ss Seq
CGGGTATGA
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTGTTTGATAATGAAGAGTTTGATTGCCGGACTCCCACAGAGTGGCTCAACATGGGCTTGGAGCCAGGCTCACAAAACAGGAAGCCCGTCCCTGGAAAAGCCCTTCTTCCCACAGACGACGATCTGGGGCACG
Seq A exon
AGGACCCCAAGAATCAGGAACTGGACTATAGATGGTGTGAAGTTGGCGTCCTTGACTACGATGAAGAAAAAAAACTGTATTTGGTGCAGAAAACTGACAAGAGAGGCTTGGTGCGCGATGAGATGGGGATGCCCATCCTGAATGGAGGGATCACCCCTGCGG
Seq C2 exon
GAAGGCCACCACTCCTGGCCACCCAGTACTGGGTCCCGAGGATCCAGCTCCTCTTCTGTGCTGAGGATCCACGTGTGTTCACACAGCGCGTGGTCCAGGCCAACGCTCTGCGCAAGTACACAGAGGCGCTGTTGATGTACAACCTGTATGTGGATTGCATGCCCACCGAGGGCCGGCGGGTCATCAATGAGCAGAGCTTGAGCAAGATAAAGCAGTGGGCTTTGAGCACACCGCGCATGCGCAAGGGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.689 A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAAAAGCCCTTCTTCC
R:
AGCTCTGCTCATTGATGACCC
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: