DreEX6092619 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34453823-34454695:-
Coord C1 exon
chr11:34454563-34454695
Coord A exon
chr11:34454228-34454386
Coord C2 exon
chr11:34453823-34454057
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTCGTGTGTTTGAGGTGCAGTGG
3' ss Score
-1.55
5' ss Seq
AAGGCATGT
5' ss Score
2.03
Exon sequences
Seq C1 exon
ATATTCGACAATGAGGAGTTTGACTGCCGTACTCCAGAGGAATGGCTGGCTTTAGGTTATGAGCCAGGCTCCATGAATCGCAAACCCATTCCAGCCAAAGCCCTGTTGCCGACAAAAAACAGCATCCCACCTG
Seq A exon
TGGATCCACAGAGCCCGGCTGTGGAGTATTCTTGGCAGTCGGTTGGGGTACTACGGTACAGCCAGGAAAAGAAGCAGTATTTGGTGCATAAAGCAGACTGTAATGGATGGGTCCGAGATTTCATGGGAAACCCCATTTTAAATGGAGGACAGAGAGAAG
Seq C2 exon
GGGTTTTGCTGGAGAGCCAGTATTGGGTTCCCAGGATCAGGTTGCTGTTTTGTGCGGAGGATCCACGTGTCTTTGCTCAGAGAGTCCAGTTTGCAGAGAATTTGAGACAAAACACAGAGGCTTCAAATTTATATCATCATTCTGTTGATTGTATGCCAGTGTGGCATCTCCATCCCACCAGTTTAGAACGCATCAGAAAATATGCACTTTCCACATCAGGCCTGCAACTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCTGTTGCCGACAAAAA
R:
GGCCTGATGTGGAAAGTGCAT
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]