BtaEX6094891 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49109943-49113324:-
Coord C1 exon
chr22:49113192-49113324
Coord A exon
chr22:49110768-49110929
Coord C2 exon
chr22:49109943-49110195
Length
162 bp
Sequences
Splice sites
3' ss Seq
AGACTCCCCTCCTGTTTCAGAGG
3' ss Score
8.2
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GTGTTTGACAATGAGGAGTTTGACTGCCGGACTCCCACTGAGTGGATCAACATGGGCTTGGAGCCAGGGTCTGAGAACAGGAAACCTGTCCCTGGCAAAGCCCTCCTGCCTACCGATGACTTCCTGGGGCACG
Seq A exon
AGGACCCCAAGAGTCAGAAGCTGAAGTACGAGTGGTGCAGTGTCGGTGTCCTGGACTACGACAAGGAGAACAAGCTGTACCTAGTGCACAAGACGAGTGAGGATGGCTTAGTGCGAGATGAGACGGGGAAGCCTATCCTGAATGGCGGGGTCACGCCTGAAG
Seq C2 exon
GAAGGTCACCCCTCCTGATCTGTCAGTACTGGGTGCCAAGGATCCAGCTCCTCTTCTGTGCTGAGGACCCACGTGTGTTCACACGACGTGTGGTCGAGGCCAACGCCCTGCGCAAGAACACAGAGGCGCTGCTGCTGTACAACCTGTACGTGGACTGCATGCCCTCTGAGGGCCAGCGGCTCGTCAGCGAGCAGAGCCTGAACAAGATCAAGCAGTGGGCCATGAGCACGCCTCGGATGCGCAAAGGGCCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=0.218 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCCTACCGATGACTTCC
R:
ATGGCCCACTGCTTGATCTTG
Band lengths:
253-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]