RnoEX6054755 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7394330-7397087:-
Coord C1 exon
chr16:7396791-7397087
Coord A exon
chr16:7395122-7395283
Coord C2 exon
chr16:7394330-7394582
Length
162 bp
Sequences
Splice sites
3' ss Seq
GGTGTCCCCCTCTGTTTTAGAGG
3' ss Score
8.75
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
TTCACCGAGCAGGCTGCAAACAGGTTTCATTCTCAAAATGTATTAATACTGGAATCAGTCTACCTGAAGCAGGCAAGAAACAGAGTGTTTCCTTCACTCTGGACTCAAATGACAGGAATAATTTAACTAAACTGAGCCCGGTTCTCCAGTGCCTAGCAATTAAGCCATGGGAACAGGGCCACGTTAAATGCACTGAGTTCCAGCTTCCTCGCTTCACGGGGGCCCTGGCCTTGAGCAGGAACACTAGAGCAAAGAGGGGCTCACAGGAAGCATCTACCAGGGACCACTTAGATTTTG
Seq A exon
AGGACCCCAAGAGTCAGGAACTGGACTACAGATGGTGTGAAGTTGGTGTCCTTGACTATGACGAAGAAAAGAAACTGTACTTGGTGCAGAAGACTGACAAGAGAGGCTTGGTGCGAGATGAGATGGGGATGCCCATCGTGAATGGAGGGGTCACCCCTGAAG
Seq C2 exon
GAAGGCCACCACTCTTGGACACCCAGTACTGGGTCCCGAGGATCCAGCTCCTCTTCTGTGCTGAGGACCCACGAGTGTTCACACAGCGTGTGGTCCAGGCCAACGCTCTGCGCAAGAACACAGAGGCGCTGTTGCTCTACAACCTGTACGTGGATTGCATGCCCACGGAAGGCCAGCGGGTCATCAACGAGCAGAGCTTGAGCAAGATAAAACAGTGGGCTTTGAGCACACCACGCATGCGCAAGGGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'11-11,'11-10,12-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.173 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACTGAGCCCGGTTCTCCA
R:
CTGTGTGAACACTCGTGGGTC
Band lengths:
256-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]