GgaEX7007702 @ galGal4
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3043460-3045048:+
Coord C1 exon
chr12:3043460-3043592
Coord A exon
chr12:3044117-3044287
Coord C2 exon
chr12:3044799-3045048
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATCCTTGATTCTCTTCTCAGAGG
3' ss Score
7.64
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATCTTTGACAATGAAGAGTATGACTGTCGAACTCCAGAAGAGTGGATCTCTCTAGGACTGGAGCCAGGATCTCATGACAGAAAGCCAGTGCCTGGGAAAGCACTTCTACCTACAGATGATGTACTGGGGCACG
Seq A exon
AGGACCCTAAAAGCCAGAAGTTAACCTACAAGTGGACTGATGTTGGTGTTCTGGATTATGACAAGGAGACGAAGCTCTATTTGGTCCATAAGTTAGATCAGAATGGGCTGGTCCGTGATGAAGAAGGGAGACCCATCCTCAATGGAGGAATAACTCCAGAAGGTGTTGCAA
Seq C2 exon
GAAGAGCTCCATTGCTGCCATGTCAGTACTGGGTGCCACGCATTTACCTGCTGTTTCTGGCTGAAGATCCTCGGGTGTTTGCACAGAGAATAGTTTCTGCCAACATCCTACGTAAAAAGACACAGATGCTGCTACTCTATCACCTGTATGTGGACTGCATGCCCACAGATGGACTAAATAGCATTAGTGAGACAAGCCTGGAGAAAATGAAGCTGTGGGCTCTGCATACACCCAAGATGAAGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGATGTACTGGGGCACG
R:
TCTTGGGTGTATGCAGAGCCC
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]