MmuEX6040509 @ mm10
Exon Skipping
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31308800-31311788:-
Coord C1 exon
chr14:31311627-31311788
Coord A exon
chr14:31310836-31311088
Coord C2 exon
chr14:31308800-31308957
Length
253 bp
Sequences
Splice sites
3' ss Seq
ACCCCCACCCCAACCCCCAGGAA
3' ss Score
7.3
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
AGGACCCCAAGAATCAGGAACTGGACTATAGATGGTGTGAAGTTGGCGTCCTTGACTACGATGAAGAAAAAAAACTGTATTTGGTGCAGAAAACTGACAAGAGAGGCTTGGTGCGCGATGAGATGGGGATGCCCATCCTGAATGGAGGGATCACCCCTGCGG
Seq A exon
GAAGGCCACCACTCCTGGCCACCCAGTACTGGGTCCCGAGGATCCAGCTCCTCTTCTGTGCTGAGGATCCACGTGTGTTCACACAGCGCGTGGTCCAGGCCAACGCTCTGCGCAAGTACACAGAGGCGCTGTTGATGTACAACCTGTATGTGGATTGCATGCCCACCGAGGGCCGGCGGGTCATCAATGAGCAGAGCTTGAGCAAGATAAAGCAGTGGGCTTTGAGCACACCGCGCATGCGCAAGGGGCAGAG
Seq C2 exon
CGTCCTGGAGCATCTTAGCTGCCTGGCCAGAGAAGTGAACCTGGACTACGAACGTAGCATGAACAAGATCAACTTTGACCAAATTGTCTCTTCTAACCCAGAGACATTCTCCTATGTGACTCTTCCTGAAAAAGAGGAAGAGAAGGTACCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.000 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCCAAGAATCAGGAACT
R:
TCCTCTTTTTCAGGAAGAGTCACA
Band lengths:
300-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types