BtaEX6094902 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49083519-49084860:-
Coord C1 exon
chr22:49084719-49084860
Coord A exon
chr22:49084102-49084257
Coord C2 exon
chr22:49083519-49083717
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCTCGCTCCTTGGCCCACAGCTG
3' ss Score
8.46
5' ss Seq
AACGTAGGC
5' ss Score
4.49
Exon sequences
Seq C1 exon
ATGGGCTGCCAGCAACTGGCCTACTAAGATCCTTGGGCAGATAGAGCTGGTGCGACAGCAACACTTGGAAGATGAGGAGAAGTTCCGCAAAATCCAGCTTATGGATCAGAACAACTTCCAGGAGAAGCTGGAAGGGCTGCAG
Seq A exon
CTGGTGGTAGCTGGCTTCTCCACCCACGTGGAGATTCTGCGTGCGCATGAAATCGCCAATGAGGTGCGGCGGGTCAAGAAGCAGCTGAAGGACTGCCAGCAGCTGGCGATGCTCTACAACAACCGCGAACGCATCTTTGGCTTGCCGATCACCAAC
Seq C2 exon
TACGACAAGCTCTCCAGGATGGTGAAGGAGTTCCAGCCCTATCTGGACCTCTGGACCACAGCCTCTGACTGGCTGCGCTGGTCCGAGAGCTGGATGAACGACCCCCTGTCAGCCATTGACGCAGAGCAACTGGAGAAGAACGTCATCGAGTCCTTCAAGACCATGCACAAGTGCGTGAAGCAGTTCAAAGACATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(15.8=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGGGCAGATAGAGCTGG
R:
CTCCAGTTGCTCTGCGTCAAT
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]