GgaEX6009959 @ galGal4
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3053584-3055453:+
Coord C1 exon
chr12:3053584-3053725
Coord A exon
chr12:3054184-3054339
Coord C2 exon
chr12:3055255-3055453
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCCTGCCTTTTCTCTTCCAGCTG
3' ss Score
12.33
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGGGCTGCAAGTTACTGGCCCCTGAAAATAGCTATGCAGACTGAGGCTATTCAGCTCCAGCATGTGCAGGATGAAGAAAGGTTCCGTGAAATCCAACTAACGGATCACAACATATTTGAAGAGAAGCTGGAGGACATGAAG
Seq A exon
CTGACTGTAGGTGAATTTTCTGTCCAGGTGGACATCAGACAAGCTCATACTTTGGCTAATGAAGCAAGGCTGGTTGGGAAACAGCTGAAGGAGCTTCAGAATTTGGCCATTCTGTACAACAACCGGGAAAAAATCTTTGGGATGAAAATTACTAAT
Seq C2 exon
TACAAGAAGCTATCCAGGATGGTGAAGGACTTCCAGCCATATTGTGATCTCTGGACTACGGTGTCAGACTGGCTGAACTGGTGTAAGAGCTGGATGGATGGTCCTCTCATTGAAATTGATGCTGAGCAGCTAGAAAAGAATGTCAATGACTCTTTTAAGACAATGCAGAAGTGTGTGAGGCAGTTCAAAAACTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(15.8=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTTACTGGCCCCTGAAA
R:
AGAGGACCATCCATCCAGCTC
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]