GgaEX6009959 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2879351-2881220:+
Coord C1 exon
chr12:2879351-2879492
Coord A exon
chr12:2879951-2880106
Coord C2 exon
chr12:2881022-2881220
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCCTGCCTTTTCTCTTCCAGCTG
3' ss Score
12.33
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGGGCTGCAAGTTACTGGCCCCTGAAAATAGCTATGCAGACTGAGGCTATTCAGCTCCAGCATGTGCAGGATGAAGAAAGGTTCCGTGAAATCCAACTAACGGATCACAACATATTTGAAGAGAAGCTGGAGGACATGAAG
Seq A exon
CTGACTGTAGGTGAATTTTCTGTCCAGGTGGACATCAGACAAGCTCATACTTTGGCTAATGAAGCAAGGCTGGTTGGGAAACAGCTGAAGGAGCTTCAGAATTTGGCCATTCTGTACAACAACCGGGAAAAAATCTTTGGGATGAAAATTACTAAT
Seq C2 exon
TACAAGAAGCTATCCAGGATGGTGAAGGACTTCCAGCCATATTGTGATCTCTGGACTACGGTGTCAGACTGGCTGAACTGGTGTAAGAGCTGGATGGATGGTCCTCTCATTGAAATTGATGCTGAGCAGCTAGAAAAGAATGTCAATGACTCTTTTAAGACAATGCAGAAGTGTGTGAGGCAGTTCAAAAACTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(15.8=97.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTTACTGGCCCCTGAAA
R:
AGAGGACCATCCATCCAGCTC
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]