MmuEX6040519 @ mm10
Exon Skipping
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31301178-31302436:-
Coord C1 exon
chr14:31302295-31302436
Coord A exon
chr14:31301752-31301907
Coord C2 exon
chr14:31301178-31301376
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTGGCTCCTTGGCCCACAGCTG
3' ss Score
8.07
5' ss Seq
AATGTAGGC
5' ss Score
3.19
Exon sequences
Seq C1 exon
ATGGGCTGCCAACAACTGGCCCTCTAAGATCCTTGGGCAGATAGATATGGTGCGGCAGCAACACGTTGAGGATGAGGAGAAGTTCCGCAAAATCCAGCTCATGGACCAGAACAACTTCCAGGAGAAGCTGGAAGGGCTGCAG
Seq A exon
CTGGTGGTGGCTGGCTTCTCCATCCATGTGGAGATTGCACGAGCACACGAGATTGCCAACGAGGTGCGGCGGGTCAAGAAGCAGCTGAAGGACTGCCAGCAGCTGGCGATGCTGTACAACAACCGCGAGCGCATCTTTGGCTTGCCTATCACCAAT
Seq C2 exon
TATGACAAGCTCTCAAGAATGGTGAAGGAATTCCAACCATACCTGGACCTCTGGACCACAGCCTCAGACTGGCTGCGGTGGTCTGAGAGCTGGATGAATGATCCTCTGTCAGCCATTGATGCTGAGCAGCTGGAGAAGAATGTCATTGAGTCGTTCAAGACCATGCACAAATGTGTGAAGCAGTTCAAGGACATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(15.8=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCTCTAAGATCCTTGGG
R:
CTGCTCAGCATCAATGGCTGA
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types