BtaEX6094927 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49060098-49062895:-
Coord C1 exon
chr22:49062857-49062895
Coord A exon
chr22:49061589-49061767
Coord C2 exon
chr22:49060098-49060328
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTCCCGTTCCTTTAGCTG
3' ss Score
9.29
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGGACTCCTCGGAGAAAAGAGTTACCGGGAGCCCGTGC
Seq A exon
CTGGGGCCCCCAACATCGCCCACTTCACGGATCCCCTCGTGGAAGCCACCATCATGGTGTACTCCACCATCACCTCCCAGCTGCTGCCCACCCCAGCCAAGTCCCACTACACCTTCAACCTGCGGGACCTCTCCAAGGTCTTCCAGGGAATGCTCATGGCCGACCCAGCCAAGGTCGAG
Seq C2 exon
GACAAGGTGCAGCTGCTGCGCCTGTGGTACCACGAGAACTGCCGCGTGTTCCGCGACCGCCTGGTGAACGACGAGGACCGTGGCTGGTTCGACAAGCTCCTGGAGAGCCACATGGATGAGTGGGAGGTGGGCTTTGAAGAGGTCTGCCCCTTCCAGCCCATCCTCTACGGGGACTTCATGTCGCCGGGCTCCGACGTCAAGTCCTACGAGCTCATCACCAATGAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'49-53,'49-51,50-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(4.6=100)
A:
PF127752=AAA_7=FE(20.8=100)
C2:
PF127752=AAA_7=PD(3.9=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGAGTTACCGGGAGCCC
R:
TGGTGATGAGCTCGTAGGACT
Band lengths:
245-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]