DreEX6092648 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34409876-34414647:-
Coord C1 exon
chr11:34414474-34414647
Coord A exon
chr11:34412019-34412197
Coord C2 exon
chr11:34409876-34410103
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTTTCATTTCTAGAGA
3' ss Score
10.24
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
GTACATTTAAAAACCTTGTTGACATAAACTTCGCCTGTGCGATGGGCCCCCCCGGCGGAGGAAGGAATCCTATCACTCAACGCTTCACACGCCACTTCAACTTCCTGTCATTCACTGAGATGGAGGACGCCAGCAAGGGGAAGATCTTCTCCACCATCCTGGGCAGCTGGATGC
Seq A exon
AGAAAACTCCAGAAATGAAGCCGTTCTGCAAGCCACTTGTTGATGCTACTATCAGGGTTTACTCCACTATTACATCCGCTCTCCTACCCACACCTGCCAAATCCCACTATACTTTCAACCTGAGAGATCTCTCCAAAGTCTTCCAGGGCATCCTGATGGCAGAGGCTGGAAAAATAGAG
Seq C2 exon
AATAAAATACAGCTACTGCAGCTTTGGTATCACGAGAGCTGCAGAGTTTTCCAGGATCGACTGGTCAGTGAAGAGGACAGGAGTTGGTTTGACCAGCTCCTCCATAACCATATAAAGAAGTTTGGGTGTGAGATTGAGGAGGTGGTCCCTTATCAGCCCATTCTCTATGGGGACTTCATGTTTCCTGGGGCTGTAAAGGTTTACCAGCTTATTCAAGATAGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'50-50,'50-49,51-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.4=100)
A:
PF127752=AAA_7=FE(22.1=100)
C2:
PF127752=AAA_7=PD(4.4=15.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACGCCACTTCAACTTCC
R:
ATGGGCTGATAAGGGACCACC
Band lengths:
251-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]