GgaEX6009934 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2903284-2905400:+
Coord C1 exon
chr12:2903284-2903322
Coord A exon
chr12:2904412-2904590
Coord C2 exon
chr12:2905170-2905400
Length
179 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTCTGTCTCTGCAGCTG
3' ss Score
12.26
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGGCCTCCTAGGAGAAAGAAGTTACAGAGATCCAGTGC
Seq A exon
CTGGAGCAGTTGCAGTCAAAGACTTGAATGAGCCCTTGGTTGATGCCACTATCTACGTGTATTTGACCATCACATCCCAGCTGTTGCCCACACCAACAAAGTCTCATTACACCTTTAACCTGAGAGACCTCTCCAAGGTGTTCCAGGGCATGCTCATGGCTCAGCCCAGCAACGTCAAG
Seq C2 exon
GACAAACACCAGCTGCTGAGACTGTGGTACCACGAGAGCTGCCGGGTCTTCTGTGATCGCCTGGTCACCAAGGAGGACCAGACCTGGTTTGACAACCTGATGAAAAGTATGATGGAGGAACTAGACACCACTTTCGATGAGGTTGTCCCATCCCAGCCGGTTCTGTTTGGGGACTTTATGGAACCAGGGGCACATATCAAACTGTATGAAGAAATCGACAGCCAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'48-50,'48-49,49-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(4.6=100)
A:
PF127752=AAA_7=FE(20.8=100)
C2:
PF127752=AAA_7=PD(3.9=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCCTAGGAGAAAGAAGT
R:
CAGTTTGATATGTGCCCCTGGT
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]