MmuEX6040547 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32091158-32095642:-
Coord C1 exon
chr14:32095604-32095642
Coord A exon
chr14:32092241-32092419
Coord C2 exon
chr14:32091158-32091388
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCCACACTCCTGTCCCACAGCTG
3' ss Score
9.25
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGGACTCCTTGGAGAGAAAAGTTACCGAGAGCCTGTGC
Seq A exon
CTGGGGCCCCCAACATCGATGATTTGACGGAGCCCCTCGTGGATGCCACCATCAATGTCTACGGTATTATCACCTCCCAGTTGCTGCCCACGCCAGCCAAGTCCCACTACACCTTTAACCTGAGGGACCTGTCCAAAGTCTTCCAGGGAATGCTCATGGCTGAACCATCTAAGGTTGAG
Seq C2 exon
GACAAGGTGCAGCTGCTGCGGCTATGGTACCATGAGAACTGCCGTGTGTTCCGTGACCGCCTGGTGAATGAGGAAGACCGCAGCTGGTTTGATGAACTCCTTGAAGCCCAGATGGAAGAGTTTGGGGTGGCCTTCAACAAAGTCTGTCCCTTCCAACCCATTCTTTATGGGGACTTCATGTCGCCAGGCTCAGATGTAAAGTCTTATGAGCTCATCACCAGTGAGAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'50-50,'50-49,51-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(4.6=100)
A:
PF127752=AAA_7=FE(20.8=100)
C2:
PF127752=AAA_7=PD(3.9=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTTACCGAGAGCCTGTGC
R:
ACTCTCACTGGTGATGAGCTCA
Band lengths:
249-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: