RnoEX0028397 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7362460-7366905:-
Coord C1 exon
chr16:7366867-7366905
Coord A exon
chr16:7363608-7363786
Coord C2 exon
chr16:7362460-7362690
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCCACTCTCCTGTCCCACAGCTG
3' ss Score
10.79
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGGACTCCTTGGAGAGAAAAGTTACCGAGAGCCTGTGC
Seq A exon
CTGGGGCCCCCAACATCGTCCACATGACGGAGCCCCTCGTGAACGCTACCATCAGTATATATGCTATCATTACCTCCCAGCTGCTGCCCACACCAGCCAAGTCCCACTATACCTTTAACCTGAGGGACCTGTCCAAAGTCTTCCAGGGAATTCTCATGGCTGAACCAGCTAAGGTTGAG
Seq C2 exon
GACAAGGTGCAGCTGCTGCGGCTGTGGTACCATGAGAACTGCCGTGTGTTCCGTGACCGCCTAGTGAATGAGGAAGATCGCGGCTGGTTTGATGGTCTCCTTGAAATGAAGATGGAGGATTTGGGGGTGGCCTTCAACAAAGTTTGTCCCTTCCAACCCATTCTTTATGGGGACTTCATGTCCCCAGGCTCAGATGTAAAGTCCTACGAGCTCATCACCAGTGAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'61-63,'61-61,62-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(4.6=100)
A:
PF127752=AAA_7=FE(20.8=100)
C2:
PF127752=AAA_7=PD(3.9=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTTACCGAGAGCCTGTGC
R:
TCTCACTGGTGATGAGCTCGT
Band lengths:
247-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]