BtaEX6094937 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49050729-49052564:-
Coord C1 exon
chr22:49052058-49052564
Coord A exon
chr22:49051459-49051584
Coord C2 exon
chr22:49050729-49050848
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGAGTCTGGTGTCTCTCCAGGGC
3' ss Score
7.69
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
TGCGGGAGGCCCAGGACGACCTGGAGGTGACACAGAGGATCCTGGAGGAGGCGAAGCAGCGCCTGCACGAGGTGGAGGATGGCATTGCCACGATGCAGGCCAAGTACCGAGAGTGCATCGCCAAGAAGGAGGAGCTGGAGCTGAAGTGTGAGCAGTGCGAGCAGCGGCTGGGCCGTGCTGACAAGGTGCGCACCCCTCTGGGGACGGCCCGTAAGCACGGCCTGCCCCCCATGGGCTGGAGGGGCCTGAGCAGTAGAGGGGGTGGTCCTGGGGTGGCTGTCCCTTCCCTCTCCCCAGCTACCTTGGTCGGGGGGACTGCACCAGGCAGGGACATCCAGGGCCAGCCTCCCCATGGACTGTCCCTGCAGCTCATCAACGGGCTGTCAGACGAGCGGGTGCGCTGGCAGGAGACGGTGGAGAGCCTGGAACACATGCTTGACAGCATCTTCGGGGACGTGCTGGTGGCCGCCGGCTTTGTGGCCTACCTGGGCCCCTTCACA
Seq A exon
GGCCAGTACCGCACAGTGCTGTATGACAGCTGGGTCAAGCAGCTCGTGGCCCACCGCGTCCCACACACCGCCGAGCCCACGCTGATCGGGACACTGGGGAACCCCGTGAAGATCCGCTCCTGGCAG
Seq C2 exon
ATCGCTGGCCTCCCCAACGACACCCTGTCAGTGGAGAATGGGGTCATCAACCAGTTCTCCCAGCGCTGGACCCACTTCATTGACCCTCAGGGCCAGGCCAACAAATGGATCAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'63-67,'63-66,64-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(22.4=39.1),PF127772=MT=PU(75.4=29.0)
A:
PF127772=MT=PD(21.5=33.3),PF127812=AAA_9=PU(4.3=23.8)
C2:
PF127812=AAA_9=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCAACGGGCTGTCAGAC
R:
TGATCCATTTGTTGGCCTGGC
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]