DreEX0027431 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34394109-34396245:-
Coord C1 exon
chr11:34396114-34396245
Coord A exon
chr11:34394364-34394489
Coord C2 exon
chr11:34394109-34394228
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATATTGTTTGTTTTCTTCAGGGC
3' ss Score
10.51
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
CTGATTGGTGGTTTGGCTGATGAAAAAGTGCGCTGGAGTGAAACCGTACAGCAGCTGGAGTATATGGTGAATAATGTGGCAGGAGATGTGCTGCTCGCTGCAGGATACGTTGCTTACCTCGGACCCTTCACT
Seq A exon
GGCGAGTATCGTTCAGCAATGGCTGAAGAGTGGCTCAGGGGTTTTAAAGATCTGGCGGTTCCTCACACAGAACAGCCCAACCTGATCAGTACCCTGGGAGACAAAGTCAAAATCCGCTCCTGGCAG
Seq C2 exon
ATTGCAGGCCTGCCGAAGGATAGTCTCTCTGTGGAGAATGGAGTAATTGCACAATACTCTCAGCGCTGGCCTCTGTTTATCGATCCGCAGGGACAGGCCAACAAGTGGATCAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'63-63,'63-62,64-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.5=100)
A:
PF127772=MT=PD(4.3=34.9),PF127812=AAA_9=PU(4.8=25.6)
C2:
PF127812=AAA_9=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGGTGGTTTGGCTGATGA
R:
GATCCACTTGTTGGCCTGTCC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]