MmuEX0014942 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32081172-32082687:-
Coord C1 exon
chr14:32082556-32082687
Coord A exon
chr14:32081971-32082096
Coord C2 exon
chr14:32081172-32081291
Length
126 bp
Sequences
Splice sites
3' ss Seq
TATGCTTTACATCTCTCCAGGGC
3' ss Score
9.13
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTCATCAACGGGCTAGCCGACGAAAAGGTTCGCTGGCAGGAGACCGTGGAGAATCTGGAGAACATGCTTGACAACATCTTTGGCGATGTGCTGGTGGCTGCCGGCTTTGTGGCCTACCTGGGCCCCTTCACG
Seq A exon
GGCCAGTACCGTACAACACTCTATGAGTACTGGGTCAACCAGCTCACAGTTCACCATGTCCCGCATACCTCCAAGCCCACACTGATTACAACACTGGGAAACCCCGTGAAGATCCGCTCTTGGCAG
Seq C2 exon
ATTGCTGGCCTCCCCAATGACACTCTGTCAGTGGAGAACGGGGTCATCAATCAGTTCTCGCAGCGCTGGACCCACTTCATTGACCCCCAGGGTCAGGCTAACAAATGGATCAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'63-63,'63-62,64-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.3=100)
A:
PF127772=MT=PD(4.0=33.3),PF127812=AAA_9=PU(4.8=26.2)
C2:
PF127812=AAA_9=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCAACGGGCTAGCCGA
R:
ATCCATTTGTTAGCCTGACCCTG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: