RnoEX6054798 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7353562-7355022:-
Coord C1 exon
chr16:7354891-7355022
Coord A exon
chr16:7354303-7354428
Coord C2 exon
chr16:7353562-7353681
Length
126 bp
Sequences
Splice sites
3' ss Seq
TAAGTTTCACATCTCCCCAGGGG
3' ss Score
7.53
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTCATCAACGGGCTAGCAGACGAAAAGGTTCGCTGGCAGGACACTGTGGAGAATCTGGAGAATATGCTTGACAACATTTTTGGCGATGTGCTGGTGGCTGCTGGCTTTGTGGCCTACCTGGGGCCCTTCACG
Seq A exon
GGGCAGTACCGTGCAGCGCTCTATGAGTACTGGGTCAACCAGCTCACAGTTTACGGTGTCCCACACACCTCCAAGCCCACGCTGATTTCAACCCTGGGAAACCCCGTGAAGATCCGCTCTTGGCAG
Seq C2 exon
ATTGCTGGCCTCCCCAATGACACTCTGTCAGTGGAGAATGGGGTCATCAATCAATTCTCCCAGCGCTGGACCCACTTCATTGACCCTCAGGGTCAGGCTAACAAATGGATCAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'78-78,'78-77,79-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.5=100)
A:
PF127772=MT=PD(3.8=33.3),PF127812=AAA_9=PU(4.3=23.8)
C2:
PF127812=AAA_9=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCAACGGGCTAGCAGAC
R:
ATCCATTTGTTAGCCTGACCCTG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]