BtaEX6095297 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50996505-50997267:+
Coord C1 exon
chr22:50996505-50996688
Coord A exon
chr22:50996765-50996839
Coord C2 exon
chr22:50997093-50997267
Length
75 bp
Sequences
Splice sites
3' ss Seq
CAGCCTCTGTGTTTCCCTAGGTG
3' ss Score
11.52
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGCACTCTCGTCTCCAGAAGACTTGGTTAAGTCACAGAAGCAGCCCCTGCTGCAGACAATGCGGGGTGTCCTGACAGAGCGTCCGCAGACCTGGCAAGACTGCGTGCTGTGGGCCTTTGGCCACTGGCAGCTCCGCTTCCATTATGGCATCACACAGCTGCTGAGGACCTACCCACCTGACAAA
Seq A exon
GTGCAGGAGGATGGAACTCCATTCTGGTCGGGTCCCAAACAGTGTCCCCAGCCCTTGAAGTTTGATGCCAGCCAA
Seq C2 exon
GATATGCACCTCCTTTACGTGCTGGCAGCTGCCAACTTGTATGCCCAGATGCATGGGCTGCCTGGCTCACAAGACCAGACTGCGCTCAGGGGACTACTGAATTTGCTGCCACTGCCTGACCCCCAGAACTTGGACCGCATTTTTGCTAGTGAGCTGGAGCTGGATTCGCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335-'19-25,'19-23,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.360 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0213416=UBACT=PU(10.4=20.0)
C2:
PF0213416=UBACT=PD(85.4=69.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACACAGCTGCTGAGGAC
R:
AAATGCGGTCCAAGTTCTGGG
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]