GgaEX6009823 @ galGal3
Exon Skipping
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2267246-2267901:-
Coord C1 exon
chr12:2267724-2267901
Coord A exon
chr12:2267574-2267648
Coord C2 exon
chr12:2267246-2267432
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCGGCTTTCCCTGCGGCAGGAA
3' ss Score
6.26
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGAGCTGCCCGAGGAGCTGCCGCGGTGGGAAGGGCTGGTGGTGCCCGAGCAGGTGCGGAGGAGCCTGCAGGAGCGGCCGCGGGACTGGGGGGACTGCGTGCGCTGGGCCCGCCGGCACTGGCAGCTCCGCTACCACAACAGCATCGCGCAGCTGCTGCACGACGTGCCGCCCTCGCAT
Seq A exon
GAATCCAGCCCCGGTGTGCCCTTCTGGTCGGGGGACAGGAGGTGTCCCCACCCACTGACGTTCGACATCAGCAAT
Seq C2 exon
GACACCCACCTGGCATACGTGGAGGCTGCTGCCCACCTTCTGGCTCACACCTACAGGCTGCCATCCTGCGGTGACCGGGTGGCCACGCGGGATGTGCTCTGCCACACGGTGCTGCCACCCTTCGTGCCCAAGGATGGGCGCTACGTCCCCACGGTGGAGGGCGTGGAAGAGGTGGAGGAGGCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0213416=UBACT=PU(7.1=20.0)
C2:
PF0213416=UBACT=FE(88.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCTACCACAACAGCATC
R:
CAGCACCGTGTGGCAGAG
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]