RnoEX0095622 @ rn6
Exon Skipping
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116758172-116758867:+
Coord C1 exon
chr8:116758172-116758358
Coord A exon
chr8:116758430-116758504
Coord C2 exon
chr8:116758708-116758867
Length
75 bp
Sequences
Splice sites
3' ss Seq
AATGGCCTTTATTTCCTCAGGTG
3' ss Score
10.13
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GACATGCACTTCCTCCCTGTTGGGCACCGATGGGACTGGAATATTGGCCTTACTGCAGCAAGTGATGGGCGTCCTAAGAACTCGGCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCGTGATAACATCGTGGAGCTGCTGAGAAAATTCCCATCTGATAAA
Seq A exon
GTGCTTGAGGACGGAACTCTGTTCTGGTCAGGATCCAAAAAGTGCCCACATCCCTTGCAATTTGATCCCAACCAA
Seq C2 exon
GACACGCATTTCCTCTATGTACTGGCAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCGGGCTCACAAAGTCAGACTGCACTCAGGGAACTGCTGACACTGACACTGCTGCAGGAGCCTGATTCCATGCCCCAGAACCTCTTCTCTGCTGAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195-'19-26,'19-25,20-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0213416=UBACT=PU(12.5=20.0)
C2:
PF0213416=UBACT=PD(82.5=61.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCTGGCAAGACTGTGTG
R:
TGCAGTCTGACTTTGTGAGCC
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]