DreEX0082632 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20731669-20732827:+
Coord C1 exon
chr23:20731669-20731864
Coord A exon
chr23:20732470-20732544
Coord C2 exon
chr23:20732638-20732827
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTACACTTTTCCGTTCTAGCTT
3' ss Score
9.51
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AGACTCAAAGTTTATGGAGCGCACACTGAAGCTCCCTGGAGCTCAGCCGCTGGAGGTGGTGGAATCGGTTTACAAGAGTCTGGTGACAGACAGGCCACGCAACTGGGATGACTGTGTAACCTGGGCCCGCAACCACTGGCAGTGTCAATATAACAATAACATCCGTCAGCTGCTGCACAATTTCCCCCCAGACCAG
Seq A exon
CTTACAAGCTCTGGGGCGCCATTCTGGTCAGGTCCAAAGAGATGTCCTCATCCATTAGAATTCAGCACTAACAAT
Seq C2 exon
GATCTTCACATGGACTACATTTTGGCAGCAGCTAACTTGTATGCCCTGTCATACGGCCTGCCATCCTGCAATGACCGCTCAGCTCTGACCAAGCTTTTGCAGGATATTAAAGTGCCTGAGTTCACACCCAAGTCAGGAGTCAAGATTCACGTGTCTGATCAGGAGCTGCAGAGTGCCAACGCATCAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559-'31-29,'31-28,32-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
PF0213416=UBACT=PU(7.4=20.0)
C2:
PF0213416=UBACT=PD(89.7=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGCTGCTGCACAATTTC
R:
GACTTGGGTGTGAACTCAGGC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]