MmuEX6043819 @ mm9
Exon Skipping
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20255715-20256908:+
Coord C1 exon
chrX:20255715-20255910
Coord A exon
chrX:20256517-20256591
Coord C2 exon
chrX:20256719-20256908
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACATTCTTATTTTGTTTTAGCTC
3' ss Score
10.2
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
AGACTCCAAATTTGTGGAGCGGACATTGCGGCTGGCTGGTACCCAGCCATTGGAGGTGCTGGAGGCTGTGCAGCGCAGCCTGGTGTTGCAGCGACCACAGACTTGGGGAGACTGTGTGACCTGGGCCTGCCACCACTGGCACACCCAGTACTGTAACAACATCCGGCAACTGCTGCACAACTTTCCTCCTGACCAG
Seq A exon
CTCACCAGCTCAGGGGCCCCTTTCTGGTCTGGACCCAAACGCTGTCCACACCCACTTACTTTTGATGTTAACAAT
Seq C2 exon
ACATTGCATCTGGATTATGTGATGGCTGCTGCCAACCTTTTTGCCCAGACCTATGGGTTGACTGGATCCCAAGACCGAGCTGCTGTGGCCTCACTCCTGCAGTCAGTACAAGTCCCAGAGTTCACCCCCAAGTCTGGTGTCAAGATTCATGTTTCTGACCAGGAGTTGCAGAGTGCCAATGCCTCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-'32-26,'32-25,33-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
PF0213416=UBACT=PU(7.4=20.0)
C2:
PF0213416=UBACT=PD(89.7=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGGAGACTGTGTGACCT
R:
TCGGTCTTGGGATCCAGTCAA
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: