RnoEX0095584 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1726106-1727299:-
Coord C1 exon
chrX:1727104-1727299
Coord A exon
chrX:1726417-1726491
Coord C2 exon
chrX:1726106-1726295
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAACTCTTTCTTTGTTTTAGCTC
3' ss Score
9.15
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
AGACTCCAAATTTGTGGAGCGGACATTGCGGCTGGCGGGTACCCAGCCATTGGAGGTGCTGGAGGCTGTGCAGCGCAGCCTGGTGCTGCAGCGACCACAGACTTGGGGCGACTGTGTGACCTGGGCCTGCCACCACTGGCACACCCAGTACTGTAACAACATACGGCAGCTGCTGCACAACTTTCCTCCCGACCAG
Seq A exon
CTCACCAGCTCAGGGGCCCCTTTCTGGTCTGGACCCAAACGATGTCCACACCCACTTACTTTTGATGTTAACAAT
Seq C2 exon
ACATTGCATCTGGATTATGTGATGGCTGCTGCCAACCTTTTTGCCCAGACCTATGGGTTGACTGGCTCCCAAGACCGAGCTGCTGTGGCCTCACTCCTACAGTCAGTACAAGTTCCAGAGTTCACCCCCAAGTCTGGTGTCAAGATCCATGTTTCTGACCAGGAGTTGCAGAGCGCCAATGCCTCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164-'33-27,'33-26,34-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
PF0213416=UBACT=PU(7.4=20.0)
C2:
PF0213416=UBACT=PD(89.7=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAACATACGGCAGCTGCT
R:
TGGGGGTGAACTCTGGAACTT
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]