BtaEX6006703 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90845448-90846749:+
Coord C1 exon
chrX:90845448-90845643
Coord A exon
chrX:90846366-90846440
Coord C2 exon
chrX:90846560-90846749
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAATCTCTCCACTTCTTTAGCTC
3' ss Score
5.46
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
AGACCCCAAGTTTGTGGAGCGGACCTTGCGACTGGCGGGCACTCAACCCCTGGAGGTGCTGGAGGCCGTGCAGCGTAGTCTCGTGCTGCAGCGGCCACAGACCTGGGCTGACTGTGTGACCTGGGCCTGCCACCACTGGCACACGCAGTACTCTAACAATATCCGGCAGCTGCTACACAACTTCCCTCCTGATCAG
Seq A exon
CTCACAAGCTCAGGAGCTCCATTCTGGTCTGGGCCCAAACGCTGTCCACACCCACTCACCTTTGATGTCAGCAAT
Seq C2 exon
CCCCTCCATCTGGACTACGTGATAGCTGCTGCCAACCTGTTCGCCCAGACCTACGGGCTGACAGGCTCTCAGGACCGAGCTGCTGTGGCCACACTCCTACAGTCTGTGCAGGTCCCCGAGTTCACCCCCAAGTCTGGAGTCAAGATCCATGTCTCTGACCAGGAGCTGCAGAGCGCCAATGCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'37-28,'37-26,38-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
PF0213416=UBACT=PU(7.4=20.0)
C2:
PF0213416=UBACT=PD(89.7=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTACACAACTTCCCTCC
R:
CTCCAGACTTGGGGGTGAACT
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]