BtaEX6095456 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022635 | LAMC1
Description
Bos taurus laminin, beta 2 (laminin S) (LAMB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046247]
Coordinates
chr22:51458361-51459729:+
Coord C1 exon
chr22:51458361-51458481
Coord A exon
chr22:51459155-51459343
Coord C2 exon
chr22:51459550-51459729
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTCCCCTCTCCCAAGAGT
3' ss Score
8.43
5' ss Seq
GCTGTAAGG
5' ss Score
4.86
Exon sequences
Seq C1 exon
GTTCATGGGGCCTGCGTCTGCAAACACAACACTCGCGGCCTTAACTGTGAGCAGTGTCAGGATTTCTATCACGACTTGCCCTGGCACCCGGCTGAGGACCGCCATAGTCATGCCTGCAAGA
Seq A exon
AGTGCGAGTGCCACGGGCACGCCCACAGCTGTCACTTCGACATGGCCATATACCTGGCATCCGGCAATGTGAGTGGAGGCGTGTGTGATGGGTGTCAGCACAACACAGCCGGGCGCCAATGTGAGCTCTGCCGGCCCTTCTTCTACCGGGACCCGACCAAGGACCTGCGTGACCCCGCTGTGTGCCGCT
Seq C2 exon
CCTGTGACTGTGACCCCATGGGTTCCCAAGACGGGGGCCGCTGTGATCCCCACGATGACCCTGCCCTGGGGCTGGTCTCGGGCCAGTGTCGCTGCAAAGAACACGTGGTGGGCTCTCGCTGCCAGCAGTGCCGCGACGGCTTCTTTGGGCTCAGTGCCAACAACCCCCTGGGCTGCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022635-'12-11,'12-9,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTCGCGGCCTTAACTG
R:
CTGAGCCCAAAGAAGCCGTC
Band lengths:
248-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]