RnoEX0049265 @ rn6
Exon Skipping
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117270551-117271361:+
Coord C1 exon
chr8:117270551-117270671
Coord A exon
chr8:117270801-117270989
Coord C2 exon
chr8:117271182-117271361
Length
189 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTGCCTCCTCTCTAGAGT
3' ss Score
6.66
5' ss Seq
GTCGTAAGG
5' ss Score
5
Exon sequences
Seq C1 exon
GTACATGGGGCCTGTATTTGCAAGCACAATACTCGTGGGCTCAACTGTGAGCAGTGTCAGGATTTCTATCAGGACCTTCCCTGGCATCCTGCTGAGGATGGCCATACTCACGCCTGTCGGA
Seq A exon
AGTGTGAGTGCAACGGGCATAGTCATAGCTGCCACTTTGACATGGCTGTGTACCTGGCATCTGGAAACGTAAGTGGAGGTGTCTGCGATGGCTGTCAGCACAACACGGCTGGGCGCCACTGCGAGCTCTGCCGGCCCTTCTTCTACCGTGACCCAACCAAGGACATGCGGGATCCAGCTGCGTGCCGTC
Seq C2 exon
CTTGTGACTGTGACCCAATGGGTTCTCAAGACGGTGGCCGCTGTGATTCCCATGATGACCCTGTGCTAGGTCTGGTCTCAGGCCAGTGTCGCTGCAAAGAACACGTGGTTGGCACTCGCTGCCAGCAATGCCGGGACGGCTTCTTTGGACTTAGTGCCAGCAACCCTCGAGGATGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768-'14-10,'14-9,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCGTGGGCTCAACTGTGA
R:
GGTTGCTGGCACTAAGTCCAA
Band lengths:
257-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]