MmuEX6068901 @ mm9
Exon Skipping
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108384432-108385391:+
Coord C1 exon
chr9:108384432-108384552
Coord A exon
chr9:108384839-108385027
Coord C2 exon
chr9:108385212-108385391
Length
189 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTGCCTTCTCTCCAGAGT
3' ss Score
7.14
5' ss Seq
GTCGTAAGG
5' ss Score
5
Exon sequences
Seq C1 exon
GTACACGGAGCCTGTATCTGCAAGCACAATACTCGTGGACTCAACTGTGAGCAGTGTCAGGATTTCTATCAGGACCTTCCCTGGCACCCTGCAGAGGACGGCCATACTCACGCCTGTCGGA
Seq A exon
AGTGTGAGTGCAACGGGCATACTCATAGCTGCCACTTTGACATGGCTGTCTACCTGGCATCTGGAAATGTAAGTGGAGGCGTATGCGATGGGTGTCAGCACAACACAGCTGGGCGCCATTGTGAGTTCTGCCGGCCCTTCTTCTACCGTGACCCCACCAAGGACATGCGGGACCCAGCTGTGTGCCGTC
Seq C2 exon
CTTGTGACTGTGACCCTATGGGTTCTCAAGATGGTGGTCGCTGTGATTCTCATGATGACCCTGTGCTAGGACTGGTCTCAGGCCAGTGTCGCTGCAAAGAACACGTGGTTGGCACTCGCTGCCAGCAATGCCGTGATGGCTTCTTTGGACTTAGTGCCAGTGACCCTCGAGGGTGCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-'12-9,'12-8,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCACAATACTCGTGGA
R:
AGTCCAAAGAAGCCATCACGG
Band lengths:
254-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: