GgaEX7007853 @ galGal4
Exon Skipping
Gene
ENSGALG00000006802 | LAMB2
Description
laminin subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_989497]
Coordinates
chr12:11547646-11548353:+
Coord C1 exon
chr12:11547646-11547766
Coord A exon
chr12:11547889-11548077
Coord C2 exon
chr12:11548174-11548353
Length
189 bp
Sequences
Splice sites
3' ss Seq
CAGGGGCGCCGTCCTCGCAGGGT
3' ss Score
6.34
5' ss Seq
GAGGTCGGT
5' ss Score
5.44
Exon sequences
Seq C1 exon
GTGCACGGGCGCTGTGTCTGCAAGCACCACACGCAGGGGCTGAACTGTGAGCGCTGCGAGGACTTCTACCACGAGCTGCCCTGGCGCCCGGCTGAGGGCTCCAGCACCAACGCCTGCCGCC
Seq A exon
GGTGCGACTGCAACGAGCACTCACGGCGCTGCCACTTCGACATGGCCGTGTTCCTGGCCACCGGGAATACCAGCGGGGCCGTGTGCGACGGCTGCCAGCACAACACCATGGGGCGCCGCTGCCACCTCTGCAAGCCCTTCTACTACAAGGATCCCAGCAAGGACCTTCGGGATCCAGCCGTGTGCCGAG
Seq C2 exon
CCTGCAACTGCGACCCTGAGGGCACCGTGGACGGAGGGCTGTGTGACGGTGCCGATGACCCGGAGCGGGGGCTGATCGCGGGGCAGTGCCGCTGCAAGGAGCATGTGCAGGGCCCTCGCTGCGACCGCTGCAAAGCCGGCTTCTTCGGGCTCAGTGCTGCCAACCCGCAGGGCTGCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCTGCAAGCACCACA
R:
CGAAGAAGCCGGCTTTGCAG
Band lengths:
257-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]