BtaEX6095695 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51871161-51871509:+
Coord C1 exon
chr22:51871161-51871223
Coord A exon
chr22:51871319-51871378
Coord C2 exon
chr22:51871474-51871509
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACCATCTGTTCCTCCTTCAGGGT
3' ss Score
12.06
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGTCTTCCTGGAAGCCCCGGACCCCAAGGCTCAGTTGGCCCCCCTGGAGAGAAAGGAGAAAAG
Seq A exon
GGTGACTGTGAAGATGGAGCCCCGGGCCTCCCAGGACAACCCGGAATTCCGGGTGAGCGG
Seq C2 exon
GGCCTTCGGGGACTTCCTGGAGATGCTGGCCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'38-42,'38-41,40-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(35.7=100),PF0139113=Collagen=FE(31.2=100)
A:
PF0139113=Collagen=PD(5.4=15.0),PF0139113=Collagen=FE(29.7=100)
C2:
PF0139113=Collagen=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCCTGGAAGCCCCG
R:
CCAGCATCTCCAGGAAGTCCC
Band lengths:
92-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]