RnoEX6037794 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117706746-117707071:+
Coord C1 exon
chr8:117706746-117706808
Coord A exon
chr8:117706883-117706942
Coord C2 exon
chr8:117707036-117707071
Length
60 bp
Sequences
Splice sites
3' ss Seq
AGCATTTGTTTTTCCTTCAGGGT
3' ss Score
9.19
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGGCTTCCTGGAAGCCCTGGACCCCAAGGCCCACCTGGTCGAACTGGAGAGAAGGGAGAAAAG
Seq A exon
GGTGACTGTGAGGATGGAGGCCCAGGCCTTCCAGGACAGCCTGGGGTTCCAGGGGAACCG
Seq C2 exon
GGCCTGCGGGGAGCTCCTGGAGTTACTGGGCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'44-42,'44-41,45-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(35.7=100),PF0139113=Collagen=FE(23.3=100)
A:
PF0139113=Collagen=PD(5.4=15.0),PF0139113=Collagen=FE(22.1=100)
C2:
PF0139113=Collagen=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGCCCTGGACCCC
R:
TTTGGGCCCAGTAACTCCAGG
Band lengths:
92-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]