BtaEX6095960 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031447 | PRSS45
Description
protease, serine, 45 [Source:HGNC Symbol;Acc:HGNC:30717]
Coordinates
chr22:53302205-53304315:+
Coord C1 exon
chr22:53302205-53302479
Coord A exon
chr22:53303334-53303497
Coord C2 exon
chr22:53303833-53304315
Length
164 bp
Sequences
Splice sites
3' ss Seq
CACACTGGACTCCTCCACAGCCA
3' ss Score
5.1
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
CACAAAAGAGTATTCAGTGATTCTTGGCACCTCCAAGCTGAAACCCCCGAACTCCACAAGAACCCTCTTGATCCCTGTGAGGGACATCATTATGCACCCCAAGTACTGGGGCCGGACCTTCATCATGGGTGATGTGGCCCTTCTCCAACTTTACAATCCTGTCATCATCAGCAAGTATGTGCAGCCCATCTGCCTTCCAGAGCCCAATTACAGCCTGAAGGTTGGGACACAGTGCTGGGTAACTGGCTGGGGCCAGGTTAAACAGCGCTTCTCAG
Seq A exon
CCAACTCCACGCTGGCCTCAGAGCTGCAGGAAGCCGAGGTGTTTATCATGGACAACAAGAAGTGTGACCAGATTTACCGCAAGAAATCCCACATCCCCCGCGTTGTCCCCCTTGTGCTGGGGGATATGATTTGTGCCACCAATTACAGAGAAGACTTGTGCTCT
Seq C2 exon
GGGGATTCTGGGGGTCCATTGGCTTGTGAAGTCGAGGGCAGATGGATTCTTGCTGGGGTGTTGTCCTGGGAAAAGGCCTGCGCCAAAGTACGTAATCCGGGCGTGTATACCCGTATCACCAAATACAGCAGATGGATCAAGAAGCAAATAAGCAATGGGATTCTCTCAGTTCCCTGCACTTCTGCCTGGCTCCTACTCCTGTTCTGGCTGCTGCAGCCCCAGATGGGCCCCTGATCTTCGCTCTCCCTTCTCCATGCTTTGCCTTTGCTGAATGAGGCCAGATCAAGATTAGATCAAGGTCATGCGTCTGTATTCAACAAGAGTCAAGATGGGGAAAAAGTGGCCCCTGGGACTGAGACCAGTTTTGGCCTCCTAGTGGGGAGGGAAGTGGTGGATGACTAAGCCTTGAGTGACCAGGAGAAAGGAAGTGTGGCCTAGAAGCGCTCTGGAATTGGGGATCAGGATAGCGGGGATTAAATTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031447-'4-8,'4-7,5-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.7=100)
A:
PF0008921=Trypsin=FE(23.3=100)
C2:
PF0008921=Trypsin=PD(19.4=57.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTGGCCCTTCTCCAAC
R:
TACACGCCCGGATTACGTACT
Band lengths:
254-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]