RnoEX0070369 @ rn6
Exon Skipping
Gene
ENSRNOG00000029649 | Prss45
Description
serine protease 45 [Source:RGD Symbol;Acc:1303021]
Coordinates
chr8:119116322-119118533:+
Coord C1 exon
chr8:119116322-119116596
Coord A exon
chr8:119117570-119117733
Coord C2 exon
chr8:119117992-119118533
Length
164 bp
Sequences
Splice sites
3' ss Seq
ATCCCTTATGTTCCCTACAGCCA
3' ss Score
8.98
5' ss Seq
TATGTACGT
5' ss Score
3.41
Exon sequences
Seq C1 exon
CAACAAAGAATACTTAGTGATGTTGGGTAGCAGCACACTCCAGCCCAGCGGCTCCCCCTGGGCCCTGAAGATTCCCGTGGGTGACATCATCATGCATCCCAAGTACTGGGGCCAGAACTTCATCAGAAGCGATATTGCCCTTCTCTGTCTTGAAACCCCTGTCACTTTCAACAAGTACATACAGCCCATCTGTCTCCCAGAGCACAACTTCAACTTGAAGGTCGGTATGAAGTGCTGGGTGACTGGCTGGGGCCAGGCTAAGCAACACCCCTCAG
Seq A exon
CCAAGTTGACACGGAGTCTAGAGCTTTGGGAGGCTGAGGTATCCATTGTTGACAACAAGAACTGTGACAGAGTCTTCCACAAGAAGACCTTCTATCCCCAAGTTATCCCCCTTATCCGGAAGAACATGATCTGTACCACCAATCATAGGGAGAACCCGTGCTAT
Seq C2 exon
GGAGATCCTGGGGGACCATTGGCTTGTGAAGTCCATGGCAGATGGATTCTGGCTGGCATATTCTCGTGGGAGAAGGCCTGCACCAAAGCTCCGAATCTAAGCGTATACACCCGCATCGACAAATATACCGGATGGATCAAGGAGCAAGTGAGCCGTGGGGCGCGGTCCGGGCGCTGCAGGACCTCCTGCCTTCTGTTCCTGCCCTGGCTGCTGCAGCTCCCAGTCAGCCCAGGACCTCCCCACCCCTTCCTCTTCCTGCTTTGCCTCTGCTGAATGGCACTAGGTTGCCTCTCCATATTCCACAGGAGTCAGGGTGGGAATGGAATGACCCCTGGAGAACTTGGGTCCTGCTCTGGCGTCCTAGCAGGGAGGACTGTGGTGGGTGGGCTAGGCCTTGCTTGAGTGTCCAGGAGAAAGGGAGGATGTGCCTGTCAGGAGGAACGTTCTGGAATTTAAGACCAAGAGCAGAGATTAAATTTGTGTGAGAATGAGCTGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029649-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.0=100)
A:
PF0008921=Trypsin=FE(22.9=100)
C2:
PF0008921=Trypsin=PD(19.1=49.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGTGACATCATCATGCA
R:
TCTGCCATGGACTTCACAAGC
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]